YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15223826, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSHRVGSR FHTASLEASS SANNPFAEGS GEMSPGPSIP LRRAALFLAA ISISCFVLYR  60
   61 AADSLSFSPP IFDLSSYLDN EEPKLEDVLS KAATRDRTVV LTTLNAAWAA PGSVIDLFFE 120
  121 SFRIGEETSQ ILDHLVIVAL DAKAYSRCLE LHKHCFSLVT EGVDFSREAY FMTRSYLKMM 180
  181 WRRIDLLRSV LEMGYNFVFT DADVMWFRNP FPRFYMYADF QIACDHYLGR SNDLHNRPNG 240
  241 GFNFVRSNNR TILFYKYWYA SRLRFPGYHD QDVLNFLKAE PFVFRIGLKM RFLNTAYFGG 300
  301 LCEPSRDLNL VRTMHANCCY GMESKLHDLR IMLQDWKDFM SLPLHLKQSS GFSWKVPQNC 360
  361 SLDSLRRYDE SVEDDEESDP PGESQD

Type	Start	End	Confidence
Cytoplasmic	1	42	0.85
Transmembrane Helix	43	62	0.87
Non-Cytoplasmic	63	386	0.96