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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6633838
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGREAMAFP GSHSQYYLQR GAFTNLAPSQ VASGLHAPPP HTGLRPMSNP NIHHPQANNP  60
   61 GPPFSDFGHT IHMGVVSSAS DADVQPPPPP PPPEEPMVKR KRGRPRKYGE PMVSNKSRDS 120
  121 SPMSDPNEPK RARGRPPGTG RKQRLANLGE WMNTSAGLAF APHVISIGAG EDIAAKVLSF 180
  181 SQQRPRALCI MSGTGTISSV TLCKPGSTDR HLTYEGPFEI ISFGGSYLVN EEGGSRSRTG 240
  241 GLSVSLSRPD GSIIAGGVDM LIAANLVQVV ACSFVYGARA KTHNNNNKTI RQEKEPNEED 300
  301 NNSEMETTPG SAAEPAASAA ENNPTLITGY IKAAIVVLFT LWVIRVYDFW VGFKCMDGRE 360
  361 AMAFPGSHSQ FYLQRGVFTN LTPSQVASGL HAPPPPPGMR PMSNPNIHHP QASNPGPPFS 420
  421 MAEHRHSDFG HSIHMGMASP AAVQPTLQLP PPPSEQPMVK KKRGRPRKYV PDGQVSLGLS 480
  481 PMPCVSKKSK DSSSMSDPNA PKRARGRPPG TGRKQRLANL GEISSEWMNT SAGLAFAPHV 540
  541 ISVGSGEDIV SKVLSFSQKR PRALCIMSGT GTVSSVTLRE PASTTPSLTF EGRFEILSLG 600
  601 GSYLVNEEGG SKSRTGGLSV SLSGPEGHVI GGGIGMLIAA SLVQVVACSF VYGASAKSNN 660
  661 NNNKTIKQEI KPKQEPTNSE METTPGSAPE AAASTGQHTP QNFPAQGMSG WPVSGSGSGR 720
  721 SLDSSRNPLT DIDLTRGSSS IHYVSAVHIF VVVDFSLGML KPDISGLRPE LSVPYCNILN 780
  781 VTEPPHFQAT QRDCNSFISL IKASFGFFNI CVQFGFGFEC LVLEMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle