YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15241036, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.40
Transmembrane Helix	37	59	0.87
Cytoplasmic	60	65	0.50
Transmembrane Helix	66	84	0.74
Non-Cytoplasmic	85	98	0.69
Transmembrane Helix	99	119	0.80
Cytoplasmic	120	131	0.85
Transmembrane Helix	132	153	0.92
Non-Cytoplasmic	154	170	0.87
Transmembrane Helix	171	193	0.85
Cytoplasmic	194	202	0.83
Transmembrane Helix	203	225	0.83
Non-Cytoplasmic	226	287	0.92
Transmembrane Helix	288	308	0.91
Cytoplasmic	309	329	0.89
Transmembrane Helix	330	352	0.67
Non-Cytoplasmic	353	380	0.74
Transmembrane Helix	381	400	0.86
Cytoplasmic	401	732	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENITKTFQY GGVDWLCEPW VGAGSLGIGR GENPLKFALP LLLLQISVFS IFSVSFQFLL  60
   61 RPFGKFAFLT QMLAGICLGP SVIGRNKQYM ATFFYARSVY IIESFEAICF LFICYITTCQ 120
  121 VDTRMIKRVG KLAFINGILL FLIPFVWGQF AAILISKRLK SGPAGIPPVE FHHVAIVQST 180
  181 MFFQVVYGVL SSLKMLNTEP GRLALASMMV HDCLSWCFFM LNIAIKLNVD LPNKNRAAFL 240
  241 SVLQTEMNAD DNDIGDSICV PTTNAVDEES NTRRTLSQGL LSLCYMRLAL HLLPLGRICG 300
  301 FTLLLWCGRL RSSHPKTSAS RHGTVRQNRF AKMIAIALPS LYYKVPLWHA ILVGFIVNIQ 360
  361 GLYDVQIYKQ NFNYTKISSK SFGAMVMSAT VNSTIFIVIV KKLYQTMSKR NPYKRRTVQH 420
  421 CRVEAPLRIL TCFRNREAVR PVLDLVELSR PAIGSPLSVF AVNLEELNNH SLPLLIHHTQ 480
  481 EISPFLVPSR RDQIVKAFHN FEKTNQETVL IECFTAVAPR KTMHEDVCAI AFDQETDIVI 540
  541 LTLDAGIELW ERLLCRNLLH NCPCSVALFI DRGRLPDFRF VPLKKLTINI GAIFLGGPDD 600
  601 REMLAYATRL ASHPSVELQV FRLVDQNGVS PLRDMVERNH DMRVINVFRK ENSEKNIIFR 660
  661 EVRIEEAVNL LDLLRKEGDD FDLMMVGIRH EENLLMLEGL SEWSDMKELG EVGDVLISKD 720
  721 LELSVSVLAV QQ