YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB4G_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESYTLSTSS ISYAKPLSPL LLTAEQPSFI LRNITLTSHP SQILAIIGPS GAGKSTLLDI  60
   61 LAARTSPTSG SILLNSVLIN PSSYRKISSY VPQHDTFFPL LTVSETFTFS ASLLLPKNLS 120
  121 KVSSVVASLL KELNLTHLAH TRLGQGLSGG ERRRVSIGLS LLHDPEVLLL DEPTSGLDSK 180
  181 SAFDVVQILK SIATSRERIV ILSIHQPSFK ILSLIDRVLL LSKGTIVYHG RLDLLEAFLL 240
  241 SKGFTVPSQL NSLEYAMEIL QNIRDPYENA NIALPDHCPE SKKQNQKQSI VRYKSSRITE 300
  301 ISLLSSRFWK IIYRTRQLLL TNILESLVVG LVLGTIYLNI GTGKEGIRKR FGLFAFTLTF 360
  361 LLSSTTQTLP IFIDERPILL RETSSGLYRL SSHILANTLV FLPYLLLIAI IYSVSLYFLV 420
  421 GLCFSWQALA YFVLVIWIIV LMANSFVLFL SSLAPNYIAG TSSVTILLAA FFLFSGYFIS 480
  481 KESLPKYWLF MYFFSMYKYA LDALLINEYS CLHNKCLVWF EEASVNSCLV TGGDVLDKNG 540
  541 LHERQRWFNV YMLLGFFVLY RVLCFLVLLK RVSGSKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	317	0.64
Transmembrane Helix	318	341	0.86
Cytoplasmic	342	350	0.59
Transmembrane Helix	351	373	0.88
Non-Cytoplasmic	374	393	0.62
Transmembrane Helix	394	421	0.78
Cytoplasmic	422	427	0.49
Transmembrane Helix	428	450	0.90
Non-Cytoplasmic	451	456	0.52
Transmembrane Helix	457	479	0.91
Cytoplasmic	480	486	0.56
Transmembrane Helix	487	501	0.43
Non-Cytoplasmic	502	549	0.71
Transmembrane Helix	550	569	0.94
Cytoplasmic	570	577	0.68