YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17473665, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA  60
   61 VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE AELIHGRWAM AAVLGIFVGQ 120
  121 AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK 180
  181 TAENFANYTG DQGYPGGRFF DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML 240
  241 IFYFEAGQGK TPLGALGL

Type	Start	End	Confidence
Cytoplasmic	1	103	0.92
Transmembrane Helix	104	126	0.86
Non-Cytoplasmic	127	135	0.81
Transmembrane Helix	136	156	0.90
Cytoplasmic	157	232	0.94
Transmembrane Helix	233	247	0.59
Non-Cytoplasmic	248	258	0.51