YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6006856
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRVSILFV CAIAVSCFTS GSASSPVDFS VCNYEFELFR FDLEAKCPPS LYPTPPIEVD  60
   61 GDSLDRLMAS QHGNAYMSVL FYASWCPFSR AVRPKFDMLS SMFPQIQHLA VEHSQALPSV 120
  121 FSRYGIHSLP SILMVNQTLN ARYHGRKDLI SLIEFYEEAT AHFGWIDLEI TGCCSGFPGL 180
  181 QPVQYVAEGE PTGLNAGDGN LITWLRKGTS IREIFKQDPF LVLSLLFICL QMAILVFPIA 240
  241 ESRMRALWAS YVANLNLGRF GEISQLFNRG IHMVDVRRLW LKLSLVKTRN FHERAKNAQA 300
  301 WASSLASVSL GQTSSDQS

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	219	0.98
Transmembrane Helix	220	240	0.91
Cytoplasmic	241	318	0.91