YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.74
Transmembrane Helix	35	56	0.92
Cytoplasmic	57	65	0.86
Transmembrane Helix	66	85	0.88
Non-Cytoplasmic	86	97	0.77
Transmembrane Helix	98	122	0.76
Cytoplasmic	123	130	0.86
Transmembrane Helix	131	152	0.93
Non-Cytoplasmic	153	163	0.81
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	201	0.83
Transmembrane Helix	202	221	0.94
Non-Cytoplasmic	222	227	0.92
Transmembrane Helix	228	249	0.91
Cytoplasmic	250	267	0.80
Transmembrane Helix	268	287	0.88
Non-Cytoplasmic	288	291	0.57
Transmembrane Helix	292	312	0.66
Cytoplasmic	313	317	0.59
Transmembrane Helix	318	340	0.83
Non-Cytoplasmic	341	345	0.51
Transmembrane Helix	346	370	0.89
Cytoplasmic	371	378	0.52
Transmembrane Helix	379	396	0.36
Non-Cytoplasmic	397	409	0.53
Transmembrane Helix	410	432	0.89
Cytoplasmic	433	487	0.57
Transmembrane Helix	488	502	0.17
Non-Cytoplasmic	503	821	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSEEPSTD ASIICYAPSM ITTNGVWQGD NPLDFSLPLF VLQLTLVVVV TRFFVFILKP  60
   61 FRQPRVISEI LGGIVLGPSV LGRSTKFAHT IFPQRSVMVL ETMANVGLLY FLFLVGVEMD 120
  121 IMVVRKTGKR ALTIAIGGMV LPFLIGAAFS FSMHRSEDHL GQGTYILFLG VALSVTAFPV 180
  181 LARILAELKL INTEIGRISM SAALVNDMFA WILLALAIAL AESDKTSFAS LWVMISSAVF 240
  241 IAVCVFVVRP GIAWIIRKTP EGENFSEFHI CLILTGVMIS GFITDAIGTH SVFGAFVFGL 300
  301 VIPNGPLGLT LIEKLEDFVS GLLLPLFFAI SGLKTNIAAI QGPATWLTLF LVIFLACAGK 360
  361 VIGTVIVAFF HGMPVREGIT LGLLLNTKGL VEMIVLNVGK DQKVLDDETF ATMVLVALVM 420
  421 TGVITPIVTI LYKPVKKSVS YKRRTIQQTK PDSELRVLVC VHTPRNVPTI INLLEASHPT 480
  481 KRSPICIYVL HLVELTGRAS AMLIVHNTRK SGRPALNRTQ AQSDHIINAF ENYEQHAAFV 540
  541 AVQPLTAISP YSTMHEDVCS LAEDKRVSFI IIPFHKQQTV DGGMESTNPA YRLVNQNLLE 600
  601 NSPCSVGILV DRGLNGATRL NSNTVSLQVA VLFFGGPDDR EALAYAWRMA QHPGITLTVL 660
  661 RFIHDEDEAD TASTRATNDS DLKIPKMDHR KQRQLDDDYI NLFRAENAEY ESIVYIEKLV 720
  721 SNGEETVAAV RSMDSSHDLF IVGRGEGMSS PLTAGLTDWS ECPELGAIGD LLASSDFAAT 780
  781 VSVLVVQQYV GSWAQEDDMD FPESPVHSHE TKVTYGLENP R