YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15215861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK  60
   61 YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS PSKEKSSGFL SFSRVMSLDS 120
  121 MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA 180
  181 TGGSDVMFRE LRRPRGDPEV QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA 240
  241 LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP 300
  301 EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Type	Start	End	Confidence
Cytoplasmic	1	215	0.95
Transmembrane Helix	216	234	0.91
Non-Cytoplasmic	235	238	0.78
Transmembrane Helix	239	259	0.81
Cytoplasmic	260	278	0.79
Transmembrane Helix	279	297	0.76
Non-Cytoplasmic	298	303	0.71
Transmembrane Helix	304	324	0.74
Cytoplasmic	325	350	0.81