YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PXG3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEAEALAT TAPLAPVTSQ RKVRNDLEET LPKPYMARAL AAPDTEHPNG TEGHDSKGMS  60
   61 VMQQHVAFFD QNDDGIVYPW ETYKGFRDLG FNPISSIFWT LLINLAFSYV TLPSWVPSPL 120
  121 LPVYIDNIHK AKHGSDSSTY DTEGRYVPVN LENIFSKYAL TVKDKLSFKE VWNVTEGNRM 180
  181 AIDPFGWLSN KVEWILLYIL AKDEDGFLSK EAVRGCFDGS LFEQIAKERA NSRKQD

Type	Start	End	Confidence
Cytoplasmic	1	89	0.59
Transmembrane Helix	90	112	0.54
Non-Cytoplasmic	113	236	0.95