YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y3IP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQIFQLPL KYCASSFSST GQRNYGASSS PSPIVICKSN GISDGLWVKR RKNNRRFGSL  60
   61 IVKQEKGDVT EIRVPVPLTL EQQEKEKQNR DDEEDEIDEG DVDPEDLKYV NEIKRVIELL 120
  121 RRNRDMIFSE VKLTIMIEDP RELERRRLLG IEDADTPSRD DLAEALEQVN DGKIPKDRAT 180
  181 LRMLHEEMIR WPNLEVEVSK KQRGKSMYAK STDTGIDPKE AAKRLNVEWD SAAAIEEVDV 240
  241 DDEQGVVTKV AGYGALYFVS ALPVIIGISV VLILFYNSLQ

Type	Start	End	Confidence
Cytoplasmic	1	253	0.70
Transmembrane Helix	254	276	0.91
Non-Cytoplasmic	277	280	0.63