YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDCT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAAAETDV SLRRRSNSLN GNHTNGVAID GTLDNNNRRV GDTNTHMDIS AKKTDNGYAN  60
   61 GVGGGGWRSK ASFTTWTARD IVYVVRYHWI PCMFAAGLLF FMGVEYTLQM IPARSEPFDL 120
  121 GFVVTRSLNR VLASSPDLNT VLAALNTVFV GMQTTYIVWT WLVEGRARAT IAALFMFTCR 180
  181 GILGYSTQLP LPQDFLGSGV DFPVGNVSFF LFFSGHVAGS MIASLDMRRM QRLRLAMVFD 240
  241 ILNVLQSIRL LGTRGHYTID LAVGVGAGIL FDSLAGKYEE MMSKRHLGTG FSLISKDSLV 300
  301 N

Type	Start	End	Confidence
Cytoplasmic	1	84	0.98
Transmembrane Helix	85	104	0.89
Non-Cytoplasmic	105	140	0.89
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	169	0.81
Transmembrane Helix	170	189	0.92
Non-Cytoplasmic	190	203	0.85
Transmembrane Helix	204	225	0.87
Cytoplasmic	226	301	0.60