YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25402744, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERGRKHRGD TQWTAWLTPT IVVANVSIFI VVMYTNDCPK TTTGANGDCV AKLLRRFSFQ  60
   61 PLRENPFLGP SSSTLEKLGA LDWKKVVQGN EKWRLITAMW LHAGIIHLVM NMFDVIIFGI 120
  121 RLEQQFGFIR IGLIYLISGF GGSILSALFL QKSISVGASG ALLGLMGAML SELLTNWTIY 180
  181 KSKLCALLSF LFIIAINLAI GLLPWVDNFA HIGGLLTGFC LGFILLMQPQ SGWEEFRNSS 240
  241 QYGARARSKY NPCQYVLFFV AAVLVVAGLT VGLVMLFDGE NGNKHCKWCH RLDCYPTSKW 300
  301 SC

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	34	0.93
Non-Cytoplasmic	35	97	0.98
Transmembrane Helix	98	120	0.89
Cytoplasmic	121	127	0.84
Transmembrane Helix	128	149	0.92
Non-Cytoplasmic	150	155	0.76
Transmembrane Helix	156	175	0.93
Cytoplasmic	176	183	0.77
Transmembrane Helix	184	203	0.94
Non-Cytoplasmic	204	209	0.74
Transmembrane Helix	210	232	0.86
Cytoplasmic	233	252	0.95
Transmembrane Helix	253	275	0.91
Non-Cytoplasmic	276	302	0.97