YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7268345, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQMLLRGSM SRVAGRCRSE FGDLPNCGDD KDIHNAVNGG FAFVKANQRT IDFYNYWYMS  60
   61 RLRYPDRHDQ DVLDQIKGGG YPAKIGLKMR FLDTKYFGGF CEPSRDLDKV CTMHANCCVG 120
  121 LENKIKDLRQ VIVDWENYVS AAKTTDGQIM TWRDPENCMK QWWWRNKTKQ VLSENSKENY 180
  181 LNIMLFIKTY IILNFCLPMN NIRNKIMLTT TILILLIVIL MVSLHLYYRW YLLRSSPFNR 240
  241 TTAASTFFTD PSSTPGGLNP SIIKSLPIFT FSAVTALFAM ECSVCLSEFK DNESGRVMPN 300
  301 CKHTFHVHCI DMWFHSHSSC PLCRSQIEPF AGGVKSSMDE VAISISDPVY GDTNHHEGTE 360
  361 TTGDSVPEDS QRKPAAIEIS QRNLGEIEND LSRSHSFRSP TDEPDDIFHS EFESRSGEVL 420
  421 LLLLLLSEFL IFCFRRSVAC K

Type	Start	End	Confidence
Cytoplasmic	1	206	0.72
Transmembrane Helix	207	228	0.93
Non-Cytoplasmic	229	418	0.60
Transmembrane Helix	419	434	0.48
Cytoplasmic	435	441	0.49