YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.74
Transmembrane Helix	8	27	0.84
Non-Cytoplasmic	28	32	0.48
Transmembrane Helix	33	53	0.75
Cytoplasmic	54	54	0.21
Transmembrane Helix	55	77	0.64
Non-Cytoplasmic	78	114	0.47
Transmembrane Helix	115	134	0.88
Cytoplasmic	135	142	0.49
Transmembrane Helix	143	169	0.66
Non-Cytoplasmic	170	192	0.48
Transmembrane Helix	193	210	0.46
Cytoplasmic	211	225	0.81
Transmembrane Helix	226	246	0.92
Non-Cytoplasmic	247	257	0.79
Transmembrane Helix	258	275	0.87
Cytoplasmic	276	290	0.73
Transmembrane Helix	291	312	0.88
Non-Cytoplasmic	313	342	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELKNFIK LWISAIISIS YCYYLSTGIK AGVFRLLSVL PVCALFLVFP LFFSYVHFSG  60
   61 CMAFFLSWLA NFKLILFSFD QGPLSPLPRT LSRFICITCF PIKPQQNPNI QNYKIPIWLF 120
  121 AIKVVIFVVL LQMYEYKQYL SPALLLVFNS LHIFLELEIV FMLVKALVFI TLGCDLEPQS 180
  181 NEPYLATSLQ DFWGRRWNLM VPAILRPAVY LPARRMACRK VNSDQAMFLG VFAAFLVSGA 240
  241 VHEMLFFYLT REVPTGEVTW FFLLHGVCTV AEVAVKKSTF VRRWWRVSPT VSRLLTVGFV 300
  301 VVTSGWFFFP LIRSGIIERL ASEALMCIDF VKHKFLLLLL GD