YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11994160
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVVPPPQRS DSGSNGDLRV YQTWKGSNIF FLQGRFVFGP DVRSLALTIC LIAVPVTIFC  60
   61 IFVARKLIDD FSDSWGVSIV AVAVVFTIYD LILLLLTSGR DPGIIPRNAH PPEPETLDGN 120
  121 MDAGAGQTPQ LRLPRIKEVQ LNGITFKVKY CDTCMLYRPP RCSHCSICNN CVERFDHHCP 180
  181 WVGQCIGMRN YRFFFMFVFS TTLLSRTRYV ATIQSPPSLK ESRYDRRSNP HNKGVVNNFK 240
  241 ETFFSTIPPS KNDFRAMVQR EPPLPPRSVA GGFMSPNMGK ANDEIEMGRK AVWADMGPAM 300
  301 SDHGDGKHGN NERLHVKDGE LGELSPDIRA TVDEQSDRPS MHPRRSSWGR KSGSWDMSPE 360
  361 VMALAARVGE QNQNGGGSSS GSGLVTENRP T

Type	Start	End	Confidence
Cytoplasmic	1	44	0.72
Transmembrane Helix	45	65	0.95
Non-Cytoplasmic	66	74	0.60
Transmembrane Helix	75	97	0.90
Cytoplasmic	98	192	0.72
Transmembrane Helix	193	210	0.51
Non-Cytoplasmic	211	391	0.74