YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15237259, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAIFSPTT LPPSTATWPC STSQKLITVR SPLKFKCRAT SSSSSITDFD LYDLLGIDRS  60
   61 SDKSQIKSAY RALQKRCHPD IAGDPGHDMA IILNEAYQLL SDPISRQAYD KEQAKLEELR 120
  121 GYTGKPIYSV WCGPETEQRA AFVDEVKCVG CLKCALCAEK TFAIETAYGR ARVVAQWADP 180
  181 ESKIKEAIEA CPVDCISMVE RSDLAPLEFL MSKQPRGNVR IGVGNTVGER VSNVFVDVKK 240
  241 FQERYAKAMS RTTKETSQRE VQISAVEAIR SISNWLYWRS SPYTKPLSPE SNMSLTFTKR 300
  301 KKAVDPDIRK LQDVVAAMKQ ADQSGRTKEK GSAYLLGEDY WSPSNAALPS SGNNNGSKAS 360
  361 SNPQVTRKTF PSEEKPTSRR ENRRQFRIKK FPIGTAIVAV FLVQYQASYR AASELNDHIG 420
  421 GSLALSIVNS PWQQILLAGV TWYFIGAMLL QLVEAVQHKL EDKET

Type	Start	End	Confidence
Cytoplasmic	1	387	0.55
Transmembrane Helix	388	407	0.57
Non-Cytoplasmic	408	434	0.82
Transmembrane Helix	435	453	0.78
Cytoplasmic	454	465	0.75