YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7267122, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.94
Transmembrane Helix	99	120	0.74
Non-Cytoplasmic	121	127	0.66
Transmembrane Helix	128	154	0.75
Cytoplasmic	155	172	0.69
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	210	0.66
Transmembrane Helix	211	228	0.70
Cytoplasmic	229	238	0.74
Transmembrane Helix	239	260	0.93
Non-Cytoplasmic	261	270	0.72
Transmembrane Helix	271	292	0.90
Cytoplasmic	293	310	0.79
Transmembrane Helix	311	331	0.90
Non-Cytoplasmic	332	366	0.55
Transmembrane Helix	367	390	0.91
Cytoplasmic	391	406	0.56
Transmembrane Helix	407	421	0.72
Non-Cytoplasmic	422	422	0.02
Transmembrane Helix	423	437	0.66
Cytoplasmic	438	440	0.36
Transmembrane Helix	441	462	0.82
Non-Cytoplasmic	463	469	0.42
Transmembrane Helix	470	492	0.90
Cytoplasmic	493	674	0.56
Transmembrane Helix	675	695	0.81
Non-Cytoplasmic	696	746	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPVREERR SSSSSAGPLQ QTISLAADDA IDSGPSSPLV VKVSVFETEH ETTKLIHAPS  60
   61 TLLGETTGDA DFPPIQSFRD AKLVCVVETS KLWEIAAPIA FNILCNYGVN SFTSIFVGHI 120
  121 GDLELSAVAI ALSVVSNFSF GFLLGMASAL ETLCGQAFGA GQMDMLGVYM QRSWLILLGT 180
  181 SVCLLPLYIY ATPLLILLGQ EPEIAEISGK FTTQIIPQMF ALAINFPTQK FLQSQSKVGI 240
  241 MAWIGFFALT LHIFILYLFI NVFKWGLNGA AAAFDVSAWG IAIAQVVYVV GWCKDGWKGL 300
  301 SWLAFQDVWP FLKLSFASAV MLCLEIWYFM TIIVLTGHLE DPVIAVGSLS IWVSNELGSG 360
  361 HPRAAKYSVI VTVIESLVIG VVCAIVILIT RDDFAVIFTE SEEMRKAVAD LAYLLGITMI 420
  421 LNSLQPVISG VAVGGGWQAP VAYINLFCYY AFGLPLGFLL GYKTSLGVQG IWIGMICGTS 480
  481 LQTLILLYMI YITNWNKEVP PLISAYAAAP GPKPVVDSKD DDHKEVTPCY EAETSHPLYM 540
  541 SRHFVFPPTG QLENTSDLTE ASLTGSHCKE GSDLSLKGLD LSDDFGGLEF SEDKGKKEEN 600
  601 IYTTAMSSLD DERAIGGSHV YEPVEEPTEP VSPSDVTLDL NPIKDDEVAN SPPSEEAWWK 660
  661 RSVASLIAQA KETNTVWSIC IAAAVMGIVI LGQHWQQERW QILQQKWESS IGNEVFSLGS 720
  721 LFFEPPWYDV SLNYVTTLFG CRKLED