YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IDH4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRPVTVIDS NVTNAVHQVM DAMQAPVYFE TYIIKGKNMN HLTWEVVDSI RKNKVCLNGR  60
   61 VNNSLCGGAR KELDLFASLV DCFNLNGQPS RHENVDIVVI RENTEGEYAG REHEVVPGVI 120
  121 ESFQVTMTKF WSDRIAKYAF EYAHFSKRKK VTAVHNNGKY EKLADAFFLE SCQEVAKMYP 180
  181 NITYNEIASR ETRAIRRHSN SKSLWAIIAN IASGVAGGSF GDDYAIFEQV GSVGNHKNPV 240
  241 ALLFSSVMML RHLLLPLFAD RLKTAVTRVI SEGKCGNSNT TTQEVVDSVI ANLD

Type	Start	End	Confidence
Cytoplasmic	1	202	0.90
Transmembrane Helix	203	221	0.86
Non-Cytoplasmic	222	239	0.81
Transmembrane Helix	240	258	0.78
Cytoplasmic	259	294	0.85