YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	55	0.84
Non-Cytoplasmic	56	69	0.77
Transmembrane Helix	70	89	0.94
Cytoplasmic	90	103	0.86
Transmembrane Helix	104	123	0.96
Non-Cytoplasmic	124	140	0.84
Transmembrane Helix	141	159	0.92
Cytoplasmic	160	179	0.89
Transmembrane Helix	180	201	0.92
Non-Cytoplasmic	202	225	0.85
Transmembrane Helix	226	246	0.90
Cytoplasmic	247	281	0.97
Transmembrane Helix	282	302	0.92
Non-Cytoplasmic	303	331	0.96
Transmembrane Helix	332	354	0.86
Cytoplasmic	355	363	0.87
Transmembrane Helix	364	383	0.93
Non-Cytoplasmic	384	404	0.85
Transmembrane Helix	405	426	0.89
Cytoplasmic	427	437	0.70
Transmembrane Helix	438	458	0.87
Non-Cytoplasmic	459	473	0.79
Transmembrane Helix	474	496	0.89
Cytoplasmic	497	512	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALEAERAA NNATALETQS SPEDLGQPSP LRKIISVASI AAGVQFGWAL QLSLLTPYIQ  60
   61 LLGIPHKWSS YMWLCGPISG MIVQPIVGYH SDRCESRFGR RRPFIAAGVA LVAVSVFLIG 120
  121 FAADMGHSFG DKLENKVRTR AIIIFLTGFW FLDVANNTLQ GPCRAFLADL AAGDAKKTRV 180
  181 ANACFSFFMA VGNVLGYAAG SYTNLHKMFP FTMTKACDIY CANLKTCFFL SITLLLIVTF 240
  241 SSLWYVKDKQ WSPPQGDKEE KTSSLFFFGE IFGAVRHMKR PMVMLLIVTV INWIAWFPFI 300
  301 LYDTDWMGRE VYGGNSDGDE RSKKLYDQGV QAGALGLMFN SILLGFVSLG VESIGRKMGG 360
  361 AKRLWGCVNF ILAIGLAMTV LVTKSAEHHR EIAGPLAGPS SGIKAGVFSL FTVLGIPLAI 420
  421 TYSIPFALAS IFSTNSGAGQ GLSLGVLNIA ICIPQMIVSF SSGPLDAQFG GGNLPSFVVG 480
  481 AIAAAVSGVL ALTVLPSPPP DAPAMSGAMG FH