YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7441830, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLRMKGLG HCLVYVVVFS VIAAIVTAYD SPSSTPQYTS PYPPKNYSPY LSESPPPPPP  60
   61 QYRRQEPKYT PHPEPNVYDS PTPLPYYFPF PKLDIKSPPP PSVYTFSPPQ LYYSPSPKVE 120
  121 YKSPPPPYVY SSLPPLTYYS PSPKVIYNSP PPPYIYSSPP PPPYYSPSPK VDYKSPPPPY 180
  181 VYSSPPPPPY YSPSPKVEYK SPPPPYVYSF PPPPPYYSPS PKVGYKSPPA PYVYSSPPPP 240
  241 PYYSPSPKVN YKSPPPPYVY SSPPPPPYSP SPKVEFKSPP PPYIYNSPPP PSYYSPSPKI 300
  301 DYKSPPPPYV YSSPPPPTYY SPSPRVDYKS PPPPYVYNSL PPPYVYNSPP PPPYYSPSPT 360
  361 VNYKSPPPPY VYNSPPPPPY YSPFPKVEYK SPPPPYIYNS PPPPPYYSPS PKITYKSPPP 420
  421 PYIYKTPYY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.81
Transmembrane Helix	9	29	0.80
Non-Cytoplasmic	30	429	0.99