YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294045, gi\|9...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLIAYLSL FSNFSPLLKL SRILSNLWLL VRTSTNIKRK RWCLAIPIYH LHHATPLWKS  60
   61 SITMLLRFQS MVEPPTYRFE ISLSRAFILT QAMSHGETLL WDTTSLFGLT RILWFSSSAS 120
  121 PHGQNQQTST FPSPEMDASL SSSPYNSRHH HDLHLSEGKL GLQLVGLVLF GPLRYRMPIS 180
  181 KDDPKLPLLK PRSDLNYSLS IFSQSLYHLL ASIDRGHHTN HNELVLIWLH KNSLRTLPLV 240
  241 SSRTFVTGFI CLKNNGIMFP TPTSRWCDLC HPSATICISP THLGISFKQS CISSRVKAHI 300
  301 SRISKEVPNL FEIITEPSPH ALVVKGLKKI GIMITSPRSG DYQRFFNLSH SYPLITEFKQ 360
  361 KRFNIIKFSI HDLQSLGKNG IMISSPWSDD YRSFFNLLDL TPIVTHLLGD EQLQFLLLVS 420
  421 ARTSALEPYS TSSRLLTVTN LLSIDSFVED PSTTRDLTCA IMPYSLWLKA LMNFMSFHII 480
  481 YHILVLGNAS FNYVLNFVIF ESLLLIFVLI

Type	Start	End	Confidence
Non-Cytoplasmic	1	476	0.55
Transmembrane Helix	477	509	0.61
Cytoplasmic	510	510	0.51