YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLMT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAAIGVL LPFPFYWWLW TNAQSWVNLC GRERDPSTVM ARVSHVLKAA QLLSLFSVAS  60
   61 LSWPPPLYFW PLMAFGQFLN FRVYQLLGEA GTYYGVRFGK NIPWVTEFPF GVIRDPQYVG 120
  121 SIMSLLACLS WVPFQYILLW SLGYVFMMFL ESKEDPNARA KSIS

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.59
Transmembrane Helix	6	24	0.57
Cytoplasmic	25	48	0.76
Transmembrane Helix	49	69	0.83
Non-Cytoplasmic	70	117	0.84
Transmembrane Helix	118	144	0.74
Cytoplasmic	145	164	0.75