YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60543349, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLLMRSLL VHPCGGSIIN VRSTTTSAQY VASRSRDPVF EKLMDKYKNL LKVIAIQDLT  60
   61 LANPTADPPS LSIEFLSRLS QKLHLNRGAA SFLRKYPHIF HVLYDPVKAE PFCRLTDVAM 120
  121 EISRQEALAI TATLSLVVDR LVRLLSMSIS KSIPLRAVFK VWRELGLPDD FEDSVISKNP 180
  181 HLFKLSDGHE SNTHILELVQ EEEKRLEFEA AVEKWRVVEC SKEDCSVDRT EIQFSFKHSY 240
  241 PPGMRLSKTF KAKVKEWQRL PYVGPYEDMV GKKKSRSGVM GIEKRAVAIA HEFLNLTVEK 300
  301 MVEVEKISHF RKCFGIDLNI RDLFLDHPGM FYVSTKGKRH TVFLREAYER GRLIDPNPVY 360
  361 DARRKLLDLV LLGRHAALSE SGNTSMSEQE

Type	Start	End	Confidence
Signal Peptide	1	16	0.83
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	390	0.98