YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778534
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.98
Transmembrane Helix	9	33	0.86
Non-Cytoplasmic	34	50	0.94
Transmembrane Helix	51	74	0.88
Cytoplasmic	75	83	0.87
Transmembrane Helix	84	105	0.91
Non-Cytoplasmic	106	113	0.75
Transmembrane Helix	114	135	0.91
Cytoplasmic	136	143	0.82
Transmembrane Helix	144	163	0.91
Non-Cytoplasmic	164	168	0.79
Transmembrane Helix	169	187	0.85
Cytoplasmic	188	200	0.68
Transmembrane Helix	201	222	0.89
Non-Cytoplasmic	223	235	0.85
Transmembrane Helix	236	257	0.92
Cytoplasmic	258	267	0.62
Transmembrane Helix	268	284	0.79
Non-Cytoplasmic	285	288	0.61
Transmembrane Helix	289	310	0.77
Cytoplasmic	311	375	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMINKTLV LTYIYLLIYI ILSSGVILYN KVIADSTLFW VLSPKYFNFP LPITLTMIHM  60
   61 GFSGFVAFLL IRVFKVVSPV KMTFEIYVTC VVPISAFFAS SLWFGNTAYL HISVAFIQML 120
  121 KALMPVATFL MAVVCGTDKA RCDVFMNMVL VSVGVVVSSY GEINFNVIGT VYQVMGIFAE 180
  181 ALRLVLTQVL LQKKGLTLNP VTSLYYIAPC SFVFLSLPWY VLEKPNIDVS QIQFNFWIFF 240
  241 SNALCALALN FSIFLVIGRT GAVTIRVAGV LKDWILIALS TVIFPESTIT GLNITGYAIA 300
  301 LCGVVMYNYI KIKDVKAIQP TTDSLPDRIT KDWKEKNSSD GGSPRGLELN DEEAPLITSR 360
  361 LSHIGRTQLG NHTAV