YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|208879524, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGDRKSPE QTNQALSPPT PIVQENGTPT KRVLITSLLA GVIGGGAGLV SKHRIAHPNI  60
   61 PTVYAANFAI VAGCYCGARE SVRITRRSEH DDLMNSAIGG LFSGALLGRL QGGPKGAIRY 120
  121 SLVFAAVGTA FDYATLKGKP MLESYRNMES FKLPEWSPIK VLDEEALAKK KAHEEKIFPE 180
  181 RVLGKLNKE

Type	Start	End	Confidence
Cytoplasmic	1	32	0.92
Transmembrane Helix	33	51	0.89
Non-Cytoplasmic	52	59	0.66
Transmembrane Helix	60	78	0.84
Cytoplasmic	79	92	0.80
Transmembrane Helix	93	110	0.72
Non-Cytoplasmic	111	116	0.63
Transmembrane Helix	117	136	0.74
Cytoplasmic	137	189	0.86