YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TECR_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV  60
   61 VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY LGPLLIYPVF YYFPVYKFLG 120
  121 YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA 180
  181 YYVNHPLYTP VSDLQMKIGF GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV 240
  241 TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP 300
  301 RRWVILPPFL

Type	Start	End	Confidence
Cytoplasmic	1	95	0.91
Transmembrane Helix	96	113	0.59
Non-Cytoplasmic	114	126	0.55
Transmembrane Helix	127	143	0.34
Cytoplasmic	144	163	0.60
Transmembrane Helix	164	182	0.63
Non-Cytoplasmic	183	197	0.68
Transmembrane Helix	198	216	0.85
Cytoplasmic	217	233	0.66
Transmembrane Helix	234	249	0.77
Non-Cytoplasmic	250	260	0.67
Transmembrane Helix	261	280	0.96
Cytoplasmic	281	310	0.98