YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BCCIP_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRPSSGRR VLKHQPLTFS PFMRLLSFAS MARRDLSHPE DCQCSDEDIS FDEKQKIPNL  60
   61 PRKGKEEQVS DSSDEEDSQE DVQADFEFFD PKPTDFHGVK ILLQNYLDDK EWDLSSFVDC 120
  121 ILEQTTVGTV VKVADDEDES VFALVTALNM ARDKDNKCFR ELKEFLRKVC SEKNIANNLE 180
  181 MLLEKKAQDV GLLVSQRVMN LPPQLLPPLY DGLFDEVSWA IEDEPTEKLR RSFRFKSYLL 240
  241 VTKIYKLKNP KQRKPRHGEE DIEDTVFLKP EDELFLELSS WSFTFPMRSQ LVTSQEMKNY 300
  301 QLMGLVMAVE ANKIPKFRQM LNSLID

Type	Start	End	Confidence
Signal Peptide	1	32	0.89
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	326	0.99