YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13374872
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRESENTDD EPSKWMKFRS LLVFSMLLRV FLIVYGEWQD AHMEVRYTDV DYIVFSDAAS  60
   61 LMASGESPYK RTTYRYSPLL ALLLTPNSFF HRSWGKFLFS ASVHQPHNVS MICFSVVLES 120
  121 ISMFQIYWSA GNLLQAAFWY GLVVHFRVYP IIYALPIILV LDTQVFRSGQ KPALLYWNTG 180
  181 QAKTPASNME RKTFLFNLLT TLKSLFSRER IMFALISGGV FLACNAVSFY FYGQEFLHEA 240
  241 LLYHLTRTDP RHNFSIYFYH IYLHYERQFS AVEKLISFLP QFTVQFALVF CFSQDLVFCI 300
  301 FLQTVAFVTF NKVITAQYFV WFYCLLPLIL PWSHMKLKWE GLLCIIMWIG AQTHWLLWGY 360
  361 MLEFKGVNVF LPLWIASLLF LAANTFVLVR IIQRHRFSPL FRRYESSSSS NNVTKED

Type	Start	End	Confidence
Cytoplasmic	1	17	0.91
Transmembrane Helix	18	36	0.86
Non-Cytoplasmic	37	71	0.87
Transmembrane Helix	72	91	0.76
Cytoplasmic	92	107	0.73
Transmembrane Helix	108	128	0.87
Non-Cytoplasmic	129	142	0.68
Transmembrane Helix	143	161	0.84
Cytoplasmic	162	210	0.88
Transmembrane Helix	211	233	0.91
Non-Cytoplasmic	234	312	0.64
Transmembrane Helix	313	332	0.69
Cytoplasmic	333	340	0.62
Transmembrane Helix	341	358	0.90
Non-Cytoplasmic	359	369	0.69
Transmembrane Helix	370	392	0.92
Cytoplasmic	393	417	0.87