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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149067645
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCTWTAFLL LKVFASCLGF NLDAEKPTRF HMDGAEFGHS VVQYGGSWVV VGAPKEIQAT  60
   61 NQIGGLYKCG YHTGMCESIS LQVPPEAVNM SLGLSLTATN PSWLLACGPT VHHICRENTY 120
  121 LTGLCFLLDS SFRQNQNFPA AQQGCPRQDQ DIVFLIDGSG SITYTDFEKM LAFVKAVMSQ 180
  181 LQQSSTRFSL MQFSHTFRTH FTFNDFISTS SPLRLLDFVN QLRGSTRTAS AIKHVITELF 240
  241 TTQKGARKDA TKILIVITDG RKEGDRLDYG DVIPMAEAAG IIRYAIGVGQ AFYQAQSRQE 300
  301 LKDIASSPSR EYVFSVENFD ALKDIQNQLK EKIFAIEGTE TPSSSSFELE MSQEGFSAVF 360
  361 TPDGPVLGAV GSFGWSGGAF LYPPNTRPTF INMSQENVDM RDSYLGYSTA VAFWKGVHSL 420
  421 ILGAPRHQHT GKVVIFTQEA RHWRPKSEVR GTQIGSYFGA SLCSVDMDRD DSTDLVLIGA 480
  481 PHYYEQTRGG QVSVCPVPGV GSRWQCEATL HGEQGHPWGR FGAALTVLGD VNGDDLADVA 540
  541 IGAPGEEESR GAVYIFHGAS RLEISPSPSQ RISASRIFPR LQYFGQSLSG GQDLTGDGLV 600
  601 DLAVGSKGHL LLLRTRPILR MSSTIQFTPT EISRSVFECQ GQVTREQTLG TATVCLRTYE 660
  661 SSKTQRGDLQ SIVTFDLALD PGRLSPRAIF KETKTQALTK VRTLGLSSHC EPVTLLLPAC 720
  721 VEDSVTPITL RLNFSLVGVP IPSLQNLQPM LAVDEQTYFT ASLPFEKNCG ADHICQDDLG 780
  781 IIFGFPDLKT LVVGSNLELS VAVTVTNDGE DSYGTTITLF YPVGLSFRRV AEAQVFLRTE 840
  841 DTQQWQQQGR HSLHLMCDST PDRSQGIWST SCSSRHVIFR GGSQMTFLVT FDVSPKAELG 900
  901 DRLLLRARVS SENGVPETRK TTFQLELPVK YAVYTVISSH NQFTKYLNFS ASEKSRVSVV 960
  961 EHRFQVNNLG QRDLPVSINF RVPTELKGET VWTVMVSHPQ NPSTQCYQNR LKPTQFDLLT1020
 1021 HMQKSPVLDC SIADCLHFRC DIPSLGIQDE LDFILKGNLS FGWISQTLQK KVLLVSEAEI1080
 1081 SFDTSVYSQL PGQEAFLRAQ AKTTLEMYEV HNPVPLIVGS SVGGLLLLAL ITAVLYKAGF1140
 1141 FKRQYKEMLA EANGQFASGN GNPNPQVTQQ ELPSPSSLNL PS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle