YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11994693
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRELLADCI GRFRSLFISL LITKLCSFII YEICSYDMDE VVVEVEKTKR EWEEAYEKTI  60
   61 GHIISIQQYG KSRRGDGGEE KFSLQRLNGL AQDGLSLLNS LQFNLDLLAP QLPSDDQVQS 120
  121 TQSLLETWKN QYHSLRVNLR SANLQAKDNM RKAAQEEREL LLGGGTESTV LRRKRQANAG 180
  181 VTSDAESITE SLRRSRQLMV QEVERSTNTL VAFDESTGVL KKAESEYKGH RSLLSRTRNL 240
  241 LSTMQRQDVI DRIILIVGFS LFVFAVVYVV SKRIGILKLQ RMATAAIKAQ LAGKAANGVG 300
  301 DDVMPLGQQF DGNTVPTVNI PLQQRMHDEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	252	0.88
Transmembrane Helix	253	271	0.95
Cytoplasmic	272	330	0.88