YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4850383, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAGGHYCS KKTDDICGGV CSQEPGRFFS FSRLCCALRG VDMKTYIFLL VIVPTCVLAG  60
   61 YVHGQKISYF LRPLWESPPK PFHDIPHYYH ENASMETLCK LHGWGVRDYP RRVYDAVLFS 120
  121 NELDILAVRW RELFPYITQF VLLESNTTFT GLPKPLVFAA HRDEFKFIES RLTYGTVGGR 180
  181 FVKGQNPFYE EAYQRVALDQ LLRIAGITDD DLLLMSDVDE IPSRHTINLL RWCDEIPKIL 240
  241 HLRLKNYLYS FEFLVDNKSW RASIHRYETG KTRYAHYRQS DEILADAGWH CSFCFRRISE 300
  301 FIFKMKAYSH NDRVRFGHFL NPKRVQRVIC KGADLFDMLP EEYTFKEIIG KMGPIPHSFS 360
  361 AVHLPSYLLE NADKYRFLLP GNCIRESE

Type	Start	End	Confidence
Cytoplasmic	1	44	0.82
Transmembrane Helix	45	64	0.81
Non-Cytoplasmic	65	388	0.98