YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APY1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAKRAIGRH ESLADKVHRH RGLLLVISIP IVLIALVLLL MPGTSTSVSV IEYTMKNHEG  60
   61 GSNSRGPKNY AVIFDAGSSG SRVHVYCFDQ NLDLVPLENE LELFLQLKPG LSAYPNDPRQ 120
  121 SANSLVTLLD KAEASVPREL RPKTPVRVGA TAGLRALGHQ ASENILQAVR ELLKGRSRLK 180
  181 TEANAVTVLD GTQEGSYQWV TINYLLRTLG KPYSDTVGVV DLGGGSVQMA YAIPEEDAAT 240
  241 APKPVEGEDS YVREMYLKGR KYFLYVHSYL HYGLLAARAE ILKVSEDSNN PCIATGYAGT 300
  301 YKYGGKAFKA AASPSGASLD ECRRVAINAL KVNNSLCTHM KCTFGGVWNG GGGGGQKKMF 360
  361 VASFFFDRAA EAGFVDPNQP VAEVRPLDFE KAANKACNMR MEEGKSKFPR VEEDNLPYLC 420
  421 LDLVYQYTLL VDGFGLKPSQ TITLVKKVKY GDYAVEAAWP LGSAIEAVSS P

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	41	0.86
Non-Cytoplasmic	42	471	0.99