YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3402684, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	85	0.90
Transmembrane Helix	86	107	0.93
Cytoplasmic	108	152	0.85
Transmembrane Helix	153	173	0.83
Non-Cytoplasmic	174	181	0.84
Transmembrane Helix	182	201	0.94
Cytoplasmic	202	214	0.91
Transmembrane Helix	215	236	0.92
Non-Cytoplasmic	237	246	0.78
Transmembrane Helix	247	267	0.95
Cytoplasmic	268	339	0.99
Transmembrane Helix	340	363	0.83
Non-Cytoplasmic	364	378	0.80
Transmembrane Helix	379	399	0.70
Cytoplasmic	400	413	0.69
Transmembrane Helix	414	432	0.95
Non-Cytoplasmic	433	438	0.76
Transmembrane Helix	439	461	0.89
Cytoplasmic	462	469	0.80
Transmembrane Helix	470	490	0.85
Non-Cytoplasmic	491	527	0.92
Transmembrane Helix	528	549	0.92
Cytoplasmic	550	601	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAASPGGSM KSLTIQILTG RWFMFFGSLL IMSTAGATYM FGIYSGDIKE TLGYDQTTLN  60
   61 LLSFFKDLGA NVGVLAGLLN EVTPPWFILL IGAILNFFGY FMIWLAVTER ISKPQVWHMC 120
  121 LYICVGANSQ SFANTGSLVT CVKNFPESRG VVLGILKGYV GLSGAIITQL YRAFYGEDTK 180
  181 ELILMIGWLP AIVSFAFLRT IRIMKVKRQT NELKVFYNFL YISLGLATFL MVVIIINKLS 240
  241 GFTQSEFGGS AAVVIVLLLL PIIVVILEEK KLWKEKQVAL NDPAPINVVT EKPKLDSSEF 300
  301 KDDDGEESKE VVEKVKTPSC WTTVFNPPER GDDYTILQAL FSVDMLILFL ATICGVGGTL 360
  361 TAIDNLGQIG NSLGYPKRSV STFVSLVSIW NYYGRVVSGV VSEIFLIKYK FPRPLMLTMV 420
  421 LLLSCAGHLL IAFNVPGGLY VASVIIGFCF GAQWPLLFAI ISEIFGLKYY STLYNFGSVA 480
  481 SPIGSYLLNV RVAGYLYDVE AGKQYKALGK TRVEGQDLNC IGTSCFKLSF IIIAAVTLFG 540
  541 VLVSMVLVIR TKKFYKSDIY KKFREKALAA EMEMAAPAAA RSTVAKEDKD DVKGKVIGKG 600
  601 G