YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194474016, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLERTYLV NDQATKMYAF TSDRERGQKP VNKDQCPGDG PERPEAGAIY HCHNSFKATG  60
   61 NRSSKQVHAK WRLCAASAIC FFFMVAEVVG GHVAGSLAVL TDAAHLLIDL TSFLLSLFSL 120
  121 WLSSRPPSKR LTFGWYRAEI LGALLSVLCI WVVTGVLVYL ACERLLYPDY QIQAGIMITV 180
  181 SGCAVAANIV LTLILHQRHL GHNHKDAQAN ASVRAAFVHA LGDVFQSTSV LISALIIYFK 240
  241 PDYKMADPVC TFISSVLALA STVMILKDFS ILLMEGVPKG LSYNSVKELL LTVDGVISVH 300
  301 NLHIWSLTVN QVILSVHVAT GQ

Type	Start	End	Confidence
Cytoplasmic	1	70	0.99
Transmembrane Helix	71	94	0.88
Non-Cytoplasmic	95	102	0.80
Transmembrane Helix	103	122	0.95
Cytoplasmic	123	139	0.85
Transmembrane Helix	140	161	0.91
Non-Cytoplasmic	162	173	0.83
Transmembrane Helix	174	195	0.96
Cytoplasmic	196	215	0.94
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	244	0.84
Transmembrane Helix	245	266	0.84
Cytoplasmic	267	322	0.79