YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11277021, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPPKLRVL MVSDFFFPNF GGVENHIYYL SQCLLKLGHK VVVMTHAYGN RSGVRYMTGG  60
   61 LKVYYVPWRP FVMQTTFPTV YGTLPIVRTI LRREKITVVH GHQAFSTLCH EALMHARTMG 120
  121 YKVVFTDHSL YGFADVGSIH MNKVLQFSLA DIDQAICVSH TSKENTVLRS GLSPAKVFMI 180
  181 PNAVDTAMFK PASVRPSTDI ITIVVISRLV YRKGADLLVE VIPEVCRLYP NVRFVVGGDG 240
  241 PKHVRLEEMR EKHSLQDRVE MLGAVPHSRV RSVLVTGHIF LNSSLTEAFC IAILEAASCG 300
  301 LLTVSTRVGG FLHGLQVLPD DMVVLAEPDP DDMVRAIEKA ISILPTINPE EMHNRMKKLY 360
  361 SWQDVAKRTE IVYDRALKCS NRSLLERLMR FLSCGAWAGK LFCMVMILDY LLWRLLQLLQ 420
  421 PDEDIEEAPD ICLCHHRGVE VSEGLRKKIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.67
Transmembrane Helix	288	304	0.27
Cytoplasmic	305	390	0.57
Transmembrane Helix	391	413	0.70
Non-Cytoplasmic	414	450	0.78