YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15224154, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMERRRTALV LFVVVVVLTW QEGVLGKWLE STAKEKTGSW AGWVSDKITT GFGTKKEETG  60
   61 IYQKSKDEAR KAAQAAENYA YDKANYVKDS AYDNAGYAKD FAENKAEYAK DFAYDKAGDA 120
  121 KNMAYENAGY AKDFAYDKAG DAKDMAYEKA GHAKDFAYDK AGNAKDMAYE TAGYAKDFAY 180
  181 DKGGYAKDVA YDKAGNAKDM AYEKAGNAKD MAYEKAEHIK DFTYDKVGSA YGSAQSMMDS 240
  241 GYDKAGDAKD MAYEKAGIVK DMAYDKAGDA KDVAYEKAGI AKDMAYDKAG NAKDMAYDKV 300
  301 GSAYGSAQKA KDSGYEKAGE AKDYAYKKAG NAKDIAYEKA QDAKDFAYDK AGYGYDKAGD 360
  361 VIRMATDKSG EAYEGAKEKS KSAKDTAGEA MDDSIDYMKD KSHNAKDGAT RGFEEAMEKV 420
  421 GEKYGVAKES TKYAYETAKK KASQVAGEIR DRYAEL

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	456	0.99