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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157822801, gi...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQCVRLTVH PNNISVSQYN VLLVLETYNV PELSAGVNCT FEDLSEMDGL VIGNQIQCYS  60
   61 PAAKEVPRII TENGDHHVVQ LQLKSKETGM TFASTSFVFY NCSVHNSCLS CVESPYRCHW 120
  121 CKYRHVCTHD PKTCSFQEGR VKLPEDCPQL LRVDKILVPV EVIKPITLKA KNLPQPQSGQ 180
  181 RGYECILNIQ GMEQRVPALR FNSSSVQCQN TSYSYEGMEI NNLPVELTVV WNGHFNIDNP 240
  241 AQNKVYLYKC GAMRESCGLC LKADPDFECG WCQSPGQCTL RQHCPAHESR WLELSGANSK 300
  301 CTNPRITEII PVTGPREGGT KVTIRGENLG LEFRDIASHV KVAGVECIPL VDGYIPAEQI 360
  361 VCEMGEAKPS QHAGFVEICV AVCRPEFMAR SSQLYYFMTL TLADLKPNRG PMSGGTQVTI 420
  421 TGTNLNAGSN VVVMFGSQPC LFHRRSPSYI ICNTTSSEEV LDMKVTVQVD RARIRQDLVF 480
  481 QYVEDPTIVR IEPEWSIVSG NTPIAVWGTH LDLIQNPQIR AKHGGKEHIN ICEVLNATEM 540
  541 TCQAPALALG PDHQSDLTER PEEFGFILDN VQSLLILNKT NFTYYPNPVF EAFSPSGILE 600
  601 LKPGTPIILK GKNLIPPVAG GNVKLNYTVL VGEKPCTVTV SDVQLLCESP NLIGRHKVMA 660
  661 RVGGMEYSPG MVYIAPDSPL SLPAIVSIAV AGGLLIIFIV AVLIAYKRKS RESDLTLKRL 720
  721 QMQMDNLESR VALECKEAFA ELQTDIHELT SDLDGAGIPF LDYRTYTMRV LFPGIEDHPV 780
  781 LRDLEVPGYR QERVEKGLKL FAQLINNKVF LLSFIRTLES QRSFSMRDRG NVASLIMTVL 840
  841 QSKLEYATDV LKQLLADLID KNLESKNHPK LLLRRTESVA EKMLTNWFTF LLYKFLKECA 900
  901 GEPLFSLFCA IKQQMEKGPI DAITGEARYS LSEDKLIRQQ IEYKTLVLSC VSPDNANSPE 960
  961 VPVKILNCDT ITQVKEKILD AIFKNVPCSH RPKAADMDLE WRQGSGARMI LQDEDITTKI1020
 1021 ENDWKRLNTV AHYQVPDGSL VALVSKQVTA YNAVNNSTVS RTSASKYENM IRYTGSPDSL1080
 1081 RSRTPMITPD LESGVKLWHL VKNHEHGDQK EGDRGSKMVS EIYLTRLLAT KGTLQKFVDD1140
 1141 LFETIFSTAH RGSALPLAIK YMFDFLDEQA DKHGIHDPHV RHTWKSNCLP LRFWVNMIKN1200
 1201 PQFVFDIHKN SITDACLSVV AQTFMDSCST SEHRLGKDSP SNKLLYAKDI PSYKNWVERY1260
 1261 YSDIGKMPAI SDQDMNAYLA EQSRMHMNEF NTMSALSEIF SYVGKYSEEI LGPLDHDDQC1320
 1321 GKQKLAYKLE QVITLMSLDS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle