YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCB2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQICNFPF HPKFALQPRA QRSTRIFART ENDSPQSKTS DQQLNLSVLR FTFGIPGFDE  60
   61 SYLPRWIGYG FGSLLLLNHF SASAPISESQ MRSEALGLSL AAFSIALPYI GKFLKGSVVE 120
  121 QRSLPEEGEQ VFVISSNIGD SLKEDLAWAT YVLLRNTSTI AVLISVQGEL CVRGYWNCPD 180
  181 QMSKAQLHDW FKKKVDEIGL ADVKETLYFP QYAGSALSLD ILPDGTRSLF VQPLVQNTNE 240
  241 PQKVNGFLLV ASTAGYAYSD KDRAWIGAMA EKFRG

Type	Start	End	Confidence
Cytoplasmic	1	65	0.52
Transmembrane Helix	66	82	0.63
Non-Cytoplasmic	83	275	0.60