YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.61
Transmembrane Helix	32	54	0.85
Cytoplasmic	55	63	0.54
Transmembrane Helix	64	82	0.53
Non-Cytoplasmic	83	85	0.44
Transmembrane Helix	86	105	0.78
Cytoplasmic	106	122	0.61
Transmembrane Helix	123	143	0.87
Non-Cytoplasmic	144	151	0.44
Transmembrane Helix	152	170	0.78
Cytoplasmic	171	176	0.43
Transmembrane Helix	177	198	0.84
Non-Cytoplasmic	199	212	0.41
Transmembrane Helix	213	235	0.87
Cytoplasmic	236	272	0.46
Transmembrane Helix	273	305	0.67
Non-Cytoplasmic	306	323	0.49
Transmembrane Helix	324	346	0.70
Cytoplasmic	347	355	0.80
Transmembrane Helix	356	376	0.89
Non-Cytoplasmic	377	384	0.71
Transmembrane Helix	385	406	0.93
Cytoplasmic	407	414	0.83
Transmembrane Helix	415	433	0.97
Non-Cytoplasmic	434	452	0.87
Transmembrane Helix	453	473	0.93
Cytoplasmic	474	520	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEISHPPME QLQDLEYCID SNPPWPETVL LAFQNYILML GTSAFIPALL VPAMGGSDGD  60
   61 RARVIQTLLF VAGIKTLLQA LFGTRLPAVV GGSLAYVVPI AYIINDSSLQ KISNDHERFI 120
  121 HTMRAIQGAL IVASSIQIIL GYSQVWGLFS RFFSPLGMAP VVGLVGLGMF QRGFPQLGNC 180
  181 IEIGLPMLLL VIGLTQYLKH VRPFKDVPIF ERFPILICVT IVWIYAVILT ASGAYRGKPS 240
  241 LTQHSCRTDK ANLISTAPWF KFPYPLQWGP PTFSVGHSFA MMSAVLVSMV ESTGAYIAAS 300
  301 RLAIATPPPA YVLSRGIGWQ GIGVLLDGLF GTGTGSTVLV ENVGLLGLTR VGSRRVVQVS 360
  361 AGFMIVFSTL GKFGAVFASI PVPIYAALHC ILFGLVAAVG LSFLQFTNMN SMRNLMITGL 420
  421 SLFLGISIPQ FFAQYWDARH YGLVHTNAGW FNAFLNTLFM SPATVGLIIA VFMDNTMEVE 480
  481 RSKKDRGMPW WVKFRTFRGD NRNEEFYTLP FNLNRFFPPT