YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECI1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSLEKRDRL FILKLTGDGE HRLNPTLLDS LRSTINQIRS DPSFSQSVLI TTSDGKFFSN  60
   61 GYDLALAESN PSLSVVMDAK LRSLVADLIS LPMPTIAAVT GHASAAGCIL AMSHDYVLMR 120
  121 RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY 180
  181 GSAAETVEAA IKLGEEIVQR GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	88	0.51
Transmembrane Helix	89	111	0.53
Non-Cytoplasmic	112	130	0.71
Transmembrane Helix	131	146	0.43
Cytoplasmic	147	240	0.56