YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149062672
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFAVLIVT ACSHVLAAFT ITAPKDLYVV EYGSNVTMEC RFPVEQKLDL LALVVYWEKE  60
   61 DKEVIQFVEG EEDLKPQHSS FRGRAFLPKD QLLKGNAVLQ ITDVKLQDAG VYCCMISYGG 120
  121 ADYKRITLKV NAPYRKINQR ISMDPATSEH ELMCQAEGYP EAEVIWTNSD HQSLSGETTV 180
  181 TTSQTEEKLL NVTSVLRVNA TANDVFHCTF WRVHSGENHT AELIIPELPV PRLPHNRTHW 240
  241 VLLGSVLLFL IVGFTVFFCL RKQVRMLDVE KCGFEDRNSK NRNDTQFEET

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	238	0.99
Transmembrane Helix	239	260	0.94
Cytoplasmic	261	290	0.99