YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYQSHSFD DGEINPFANP TSVPAATSKL SPLPPEPYDR GATMDIPLDS GKDLKAKEKE  60
   61 LREKEAELKR REQEIKRKED AIAQAGIVIE EKNWPPFFPL IHHDISNEIP IHLQRIQYVA 120
  121 FTSMLGLVVC LLWNIVAVTT AWIKGEGPTI WFLAIIYFIS GVPGAYVMWY RPLYRAMRTD 180
  181 SALKFGWFFF TYLFHIAFCV FAAVAPPIIF KGKSLTGILP AIDVLSGNIL VGIFYFIGFG 240
  241 FFCLESLVSI WVIQQVYMYF RGSGKAAEMK QEATRRAMMA AL

Type	Start	End	Confidence
Cytoplasmic	1	117	0.99
Transmembrane Helix	118	142	0.87
Non-Cytoplasmic	143	149	0.81
Transmembrane Helix	150	170	0.95
Cytoplasmic	171	187	0.86
Transmembrane Helix	188	210	0.91
Non-Cytoplasmic	211	230	0.86
Transmembrane Helix	231	253	0.88
Cytoplasmic	254	282	0.96