YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12324018, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGERGETSN GREEEVIKVV VRNGSFYGGD DCSGDGDDGM TFVEIVVDAM MMTVTRVMKV  60
   61 EEGMTLEIYV TSVIPIGAMF AMTLWLGNTA YLYITVAFSQ MLKAIMPVAV FILGVCVGLE 120
  121 IMSCKMLLIM SVISFGVLVS SYGELNINWV GVVYQMGGIV SEALRLILME ILVKRKGIKL 180
  181 NPLSLMYYMS PCSAICLFIP WIFLEKSKMD TWNFHVLVLS LNSLCTFALN LSVFLVISRT 240
  241 SALTIRIAGV VKDWLVVLVS ALLFAETKLT IINLFGYAVA IVGVATYNNH KPKNGESITL 300
  301 VSQSPKNSDK KPDGPL

Type	Start	End	Confidence
Cytoplasmic	1	65	0.92
Transmembrane Helix	66	87	0.89
Non-Cytoplasmic	88	95	0.69
Transmembrane Helix	96	119	0.82
Cytoplasmic	120	125	0.69
Transmembrane Helix	126	143	0.90
Non-Cytoplasmic	144	150	0.70
Transmembrane Helix	151	169	0.90
Cytoplasmic	170	183	0.82
Transmembrane Helix	184	204	0.95
Non-Cytoplasmic	205	213	0.87
Transmembrane Helix	214	237	0.89
Cytoplasmic	238	247	0.72
Transmembrane Helix	248	265	0.69
Non-Cytoplasmic	266	268	0.51
Transmembrane Helix	269	288	0.59
Cytoplasmic	289	316	0.58