YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3413706, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNDNDIGVG VSDRNLKMSR GRGVPMMDLK RSYDVEDRVV SVSIPSIIEA DEADLWPLPE  60
   61 IDTKKSKFPC CIVWTPLPVV SWLAPFIGHI GLCREDGVIL DFAGSNFINV DDFAFGPPAR 120
  121 YLQLDRTKCC LPPNMGGHTC KYGFKHTDFG TARTWDNALS SSTRSFEHKT YNIFTCNCHS 180
  181 FVANCLNRLC YGGSMEWNMV NVAILLMIKG KWINGSSVVR SFLPCAVVTS LGVVLVGWPF 240
  241 LIGLSSFSLL LFAWFIIATY CFKNIIT

Type	Start	End	Confidence
Cytoplasmic	1	216	0.85
Transmembrane Helix	217	238	0.82
Non-Cytoplasmic	239	240	0.55
Transmembrane Helix	241	262	0.84
Cytoplasmic	263	267	0.66