YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149064700, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVSPFSGNE LYSQASHTAN STIEGHGKNS THHNEFDTII LPVLYLVIFV ASILLNGLAV  60
   61 WIFFHIRNKT SFIFYLKNIV VADLIMTLTF PFRIVRDAGF GPWYFEFILC RYTSVLFYAN 120
  121 MYTSIVFLGL ISVDRYLKVV KPFGDSRMYS ITFTKVLSIC VWVIMAVLSL PNIILTNGQP 180
  181 TKENIHDCMK LKSPLGAKWD MAVTYVDSCL FVAVLVILIG CYIAISRYIH KSSRQFISQS 240
  241 SRKRKHNQSI RVVVAVFFTC FLPYHLCRIP FTFSHLDRLL DDSAHKILHY CKEMTLFLSA 300
  301 CNVCLDPIIY FFMCKSFSRR LFKKSNIRTR SESIRSLQSV RRSEVRIYYD YTDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.96
Transmembrane Helix	41	64	0.92
Cytoplasmic	65	73	0.84
Transmembrane Helix	74	95	0.91
Non-Cytoplasmic	96	113	0.87
Transmembrane Helix	114	133	0.91
Cytoplasmic	134	150	0.88
Transmembrane Helix	151	174	0.86
Non-Cytoplasmic	175	203	0.97
Transmembrane Helix	204	229	0.84
Cytoplasmic	230	248	0.94
Transmembrane Helix	249	267	0.95
Non-Cytoplasmic	268	293	0.93
Transmembrane Helix	294	314	0.79
Cytoplasmic	315	354	0.83