YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778212, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYIYRDTKI TTKSTIPFLI FFLFCFSNLS MATLKHKPVN LVFYVYNLII IFSSHSSTAE  60
   61 LRRLLQPSKT DGTVSFLVIG DWGRRGSYNQ SQVALQMGEI GEKLDIDFVI STGDNFYDNG 120
  121 LTSLHDPLFQ DSFTNIYTAP SLQKPWYSGN HDYRGDVRAQ LSPMLRALDN RWVCMRSFIV 180
  181 NAEIVDLFFV DTTPFVDKYF IQPNKHVYDW SGVLPRQTYL NNLLKELDVA LRESVAKWKI 240
  241 VIGHHTIKSA GHHGNTIELE KHLLPILQAN EVDLYVNGHD HCLEHISSVD SNIQFMTSGG 300
  301 GSKAWKGGDV NYVEPEEMRF YYDGQGFMSV HVSEAELRVV FYDVFGHVLH HWKKTYKEAL 360
  361 YFAS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.38
Transmembrane Helix	14	33	0.50
Non-Cytoplasmic	34	364	0.75