YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUMP3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSRVTREA PTGTRILLAS LSAMVAESVT FPIDLTKTRM QLHGSGSASG AHRIGAFGVV  60
   61 SEIARKEGVI GLYKGLSPAI IRHLFYTPIR IIGYENLKGL IVRSETNNSE SLPLATKALV 120
  121 GGFSGVIAQV VASPADLVKV RMQADGRLVS QGLKPRYSGP IEAFTKILQS EGVKGLWKGV 180
  181 LPNIQRAFLV NMGELACYDH AKHFVIDKKI AEDNIFAHTL ASIMSGLAST SLSCPADVVK 240
  241 TRMMNQGENA VYRNSYDCLV KTVKFEGIRA LWKGFFPTWA RLGPWQFVFW VSYEKFRLLA 300
  301 GISSF

Type	Start	End	Confidence
Signal Peptide	1	28	0.69
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	305	0.94