YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELRNLIK VWISALISIS YCYYISSKIS KGVLRLLSLL PIFIIFLLLP LFFSSVHFCV  60
   61 ISGFFFTWLA NFKLFLFAFD QEPLSPLPSN LTRFFCFACF PIKINKNPSS NRIHNKPMSK 120
  121 WVLAFKLLIF SFLLHVYRNN YDSGLSRFAF LALFTIHVYL EAELILVFVG ALMSMLLGCE 180
  181 MEPVFNDPYL ATSLQEFWSR RWNLMVPAVL RPAVHIPVQR FCAPLLGLHR AFYAGMLATF 240
  241 IVSGLMHELI YFYVIRKSPT WEVTCFFLLH GVVTCLEIAM KRMRWLPTPR RAVSGLAITV 300
  301 FLLVTAGWLF YPQMLRNDVH KRVISECLLV IDVVKRHVVC ILM

Type	Start	End	Confidence
Cytoplasmic	1	7	0.57
Transmembrane Helix	8	27	0.74
Non-Cytoplasmic	28	35	0.33
Transmembrane Helix	36	69	0.78
Cytoplasmic	70	120	0.53
Transmembrane Helix	121	137	0.93
Non-Cytoplasmic	138	152	0.68
Transmembrane Helix	153	177	0.79
Cytoplasmic	178	230	0.75
Transmembrane Helix	231	251	0.90
Non-Cytoplasmic	252	259	0.62
Transmembrane Helix	260	280	0.82
Cytoplasmic	281	291	0.74
Transmembrane Helix	292	311	0.95
Non-Cytoplasmic	312	343	0.80