YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157820735, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSVWGLAV PLLVFYWKVG VSVSSPGTLA PSDSPRAGMT TVKAGTVSDP IEAVLGTLCT  60
   61 DDSSEETRKI TIDLLTLAHP SMGVEQLSSE SSSSSDSSAG VLSSSQALGP DSTTPAKDSV 120
  121 AFSISHIKLT TCITEIETTI TISGTPDASR SPAEAMTALS ASEMLTLPPS TEAKPVVPKT 180
  181 TSSSGILSTA TTLALATTLE GTLPASGITE SEIAVAQTPT SSGTSATGGT QVTVRRNPLE 240
  241 DTSALSSETQ SHTEVFGTIT VPTVAGSTVG EATSLVSSTA LDSSLSAVVT TKGSASSETL 300
  301 TTDNTTNSSF LTGSRPPSLI YSTTASTSER TNVTLTKTTA SPKTPMNPAP TAWTRKTTEH 360
  361 DPGINGGFLL VRLTVASPKD LTEHVTREKL MHQLRRELHT HMPLVQVSLL SIRRS

Type	Start	End	Confidence
Signal Peptide	1	24	0.58
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	415	0.98