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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PPA9_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAAVYTLFF FFLLISSVYS KATISISPQT LNRSGDIVVI KWSGVESPSD LDWLGIYSPP  60
   61 DSPHDHFIGY KFLSDSPTWQ SGSGSISLPL TNLRSNYTFR IFHWTQSEIN PKHQDHDHNP 120
  121 LPGTRHLLTE SNQLNFRFAV NRPEQIHLSY TDNINEMRVV FVTGDGEERE ARYGEVKDKL 180
  181 DNIAVARGVR YEIEHMCHAP ANSTVGWRDP GWTFDAVMKN LKQGIRYYYQ VGSDLKGWSE 240
  241 IHSFVSRNEG SEETLAFMFG DMGCYTPYTT FIRGEEESLS TVKWILRDIE ALGDDKPVIV 300
  301 SHIGDISYAR GYSWIWDEFF TQIEPIASKV PYHVCIGNHE YDWPNQPWKP DWAAYVYGKD 360
  361 SGGECGVPYS VKFNMPGNST EATGMVKGPQ SRNLYYSYDM GSVHFVYIST ETDFLKGGKQ 420
  421 YSFLKSDLES VNRSKTPFVV VQGHRPMYTT SRKIRDAAIR EKMIEHLEPL LVKNNVTVAL 480
  481 WGHVHRYERF CAISNNTCGE RWQGNPVHLV IGMAGKDSQP MWEPRANHED VPIFPQPANS 540
  541 MYRGGEFGYI RLVANKERLT LSYVGNHDGE VHDVVEILAS GEVISGSDDG TKDSNFGSES 600
  601 DFAVLWYIEG ASVMVVGVIF GYFVGFLSRK KKESGVGSSN RSWIQVKNEE T

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle